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GTCCGAGGCCGTGATCGGCTACTACAACCTGGAGCACGCCCAGCGCTTCAAGAAGCTCTTCCAGCGCCCCTACTTCCGCGTGACGCTGCTGCCGGACCCGgtgagtttgactcagtatagtgaggatggcggttacagcagttggtggttgagaggaggctgcaccgctgtgagggatgtggacagctgcttgacttgtt...
species | Chlamydomonas reinhardtii |
transcript | EDP09534 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGAAGCTCTTCCAGCGCCCCTACTTCCGCGTGACGCTGCTGCCGGACCCG GTGGGTGCTGAGCTGTGCGGTACGCTCAAGAATATCGTGGCCCTGGGTGTGEST: gi|22056096|gb|BQ812188.1|BQ812188
genomic: AGAAGCTCTTCCAGCGCCCCTACTTCCGCGTGACGCTGCTGCCGGACCCGgtgagtttga ... acacatgcagGTGGGTGCTGAGCTGTGCGGTACGCTCAAGAATATCGTGGCCCTGGGTGTG
EST: AAGCTCTATCCAGCGCCCCTACTTCCGCGTGACGCTCGCTGCCGGACCCG GTGGGTGCTGAGCTGTGCGGTACGCTCAAGAATATCGTGGCCCTGGGTGTG
genomic: AAGCTCT-TCCAGCGCCCCTACTTCCGCGTGACGCT-GCTGCCGGACCCGgtgagtttga ... acacatgcagGTGGGTGCTGAGCTGTGCGGTACGCTCAAGAATATCGTGGCCCTGGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGAGGCCGTGATCGGCTACTACAACCTGGAGCACGCCCAGCGCTTCAAGAAGCTCTTCCAGCGCCCCTACTTCCGCGTGACGCTGCTGCCGGACCCGgtgagtttgactcagtatagtgaggatggcggttacagcagttggtggttgagaggaggctgcaccgctgtgagggatgtggacagctgcttgacttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga