Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15697386|gb|BI721691.1|BI721691EST: TCACCAAGGGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCG GTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
genomic: TCACCAAGGGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCGgtgagtctca ... ccgaccccagGTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
EST:
gi|16437398|gb|BM002618.1|BM002618EST: TCACCAAGGGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCG GTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
genomic: TCACCAAGGGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCGgtgagtctca ... ccgaccccagGTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
EST:
gi|15704587|gb|BI728908.1|BI728908EST: ACCAATGTGTCT-CGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCG GTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
genomic: ACCAA-G-GGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCGgtgagtctca ... ccgaccccagGTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
EST:
gi|49461796|gb|BP089709.1|BP089709EST: CAAGGGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCG GTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
genomic: CAAGGGCTACGTGTCGGAGGAGGAGGCCGGCCGCCGCCTGGCAGCGgtgagtctca ... ccgaccccagGTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccgcgtcttactcaagctacctcctctctgccttgctccccaacccgaccccagGTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCTTCCACCACTGGCTCGTTCGACAACCAGGTGTCTGAGGAGGTGGCCGATG
gtcttac putative branch site (score: 3)
cctcctctctgccttg putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtctcacacccctgcgccccgccccggttgaagtacctgatgctactgcaaggcatctgggtctctgttaggattgtccgcagtgtttcgcgccaccgccgcacctaagggaggctgaactgaacgtacgtactattgccgcgtcttactcaagctacctcctctctgccttgctccccaacccgaccccagGTCATCTCTGACCCCAAGCTGAACAAGTCGGGCGCCTACTGGTCGTGGTCTTCCACCACTGGCTCGTTCGACAACCAGGTGTCTGAGGAGGTGGCCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG