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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGCTCCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccctcactcgctctcagggctgtaagggctaccaggttgcccggggtccaggggcggcgcgaggtgaagggctgctgcactgctgtggagcat...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07882
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34981501|gb|CF555418.1|CF555418
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|6544162|gb|AV389946.1|AV389946
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGNGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|7615939|gb|AW721379.1|AW721379
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|34982919|gb|CF556836.1|CF556836
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|10781219|gb|AV637899.1|AV637899
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|10775330|gb|AV632010.1|AV632010
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|15368596|gb|BI528022.1|BI528022
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|15372623|gb|BI532049.1|BI532049
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|14231924|gb|BG850740.1|BG850740
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|34982918|gb|CF556835.1|CF556835
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGACAAGAACCTGCGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|34983136|gb|CF557053.1|CF557053
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|14231927|gb|BG850743.1|BG850743
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGNGCATCCNCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|10790668|gb|AV628034.1|AV628034
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|34983130|gb|CF557047.1|CF557047
EST:     ATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: ATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|14235722|gb|BG854538.1|BG854538
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|15372587|gb|BI532013.1|BI532013
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGNGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|15372909|gb|BI532335.1|BI532335
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|34983137|gb|CF557054.1|CF557054
EST:     ACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCGCCAA
genomic: ACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAG-AAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAA
EST: gi|34983127|gb|CF557044.1|CF557044
EST:     CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
EST: gi|14235720|gb|BG854536.1|BG854536
EST:     CAAGCGCACCACCCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACG                         GGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC
genomic: CAAGCGCACCA-CCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccc ... cttattgcagGGCATGAAGGAGAAGATGCGCGAGCTGGCCAAGAACCTGGGCATCCCCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTGCTCCAAGCGCACCACCGACGCCATGCGCGATGCCCACAAGAAGTCCGTCACGgtgcgtaccctcactcgctctcagggctgtaagggctaccaggttgcccggggtccaggggcggcgcgaggtgaagggctgctgcactgctgtggagcat

- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggag