1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccacgcagcaccatagggtggaaggcatcgcagttgtaccgtatgcaggcgtcgatttgcacccgcctcattcgttgctgcccctcctgcgcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
species | Chlamydomonas reinhardtii |
transcript | EDP07882 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|6544162|gb|AV389946.1|AV389946
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|7615939|gb|AW721379.1|AW721379
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|34991270|gb|CF565187.1|CF565187
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAAGAGGAGACCGTGCGTEST: gi|10781219|gb|AV637899.1|AV637899
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|10775330|gb|AV632010.1|AV632010
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|15368596|gb|BI528022.1|BI528022
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|10774936|gb|AV625759.1|AV625759
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|49462012|gb|BP089925.1|BP089925
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|34982918|gb|CF556835.1|CF556835
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|34983136|gb|CF557053.1|CF557053
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|14231927|gb|BG850743.1|BG850743
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|10790668|gb|AV628034.1|AV628034
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|34982917|gb|CF556834.1|CF556834
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|10778795|gb|AV635475.1|AV635475
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|14235722|gb|BG854538.1|BG854538
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|15372587|gb|BI532013.1|BI532013
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|15372909|gb|BI532335.1|BI532335
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|34983127|gb|CF557044.1|CF557044
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGTEST: gi|10792297|gb|AV629663.1|AV629663
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
EST: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGC CACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
genomic: CAGCAGCTGGTGCAGACGGAGACGGCCCGCGTGCAAGCCGAGCTGGCTGCgtgagtcggg ... gcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacgcagcaccatagggtggaaggcatcgcagttgtaccgtatgcaggcgtcgatttgcacccgcctcattcgttgctgcccctcctgcgcaccaacagCACTGAGTTCGAGGGCTATGACGAGGAGGAGACCGTGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
ccacgca
- - - - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacccg