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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCCTAAATACCCTCTGTTGAAGCAATGGCCCTCCTTGCTACTCGCCGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtggctgctagcgagctgttaacagtctaattgcgcttgaaatataatgggaggtgccgggggctgacgcaacttgttgtccttgtgccttggtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07882
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34981501|gb|CF555418.1|CF555418
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|6544162|gb|AV389946.1|AV389946
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|7615939|gb|AW721379.1|AW721379
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|34991270|gb|CF565187.1|CF565187
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|10781219|gb|AV637899.1|AV637899
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|10775330|gb|AV632010.1|AV632010
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|15368596|gb|BI528022.1|BI528022
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|10774936|gb|AV625759.1|AV625759
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|49462012|gb|BP089925.1|BP089925
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|34982918|gb|CF556835.1|CF556835
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|34983136|gb|CF557053.1|CF557053
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|14231927|gb|BG850743.1|BG850743
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|10790668|gb|AV628034.1|AV628034
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|34982917|gb|CF556834.1|CF556834
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|10778795|gb|AV635475.1|AV635475
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|14235722|gb|BG854538.1|BG854538
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|15372587|gb|BI532013.1|BI532013
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|15372909|gb|BI532335.1|BI532335
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|34983127|gb|CF557044.1|CF557044
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
EST: gi|10792297|gb|AV629663.1|AV629663
EST:     CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAG                         CTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG
genomic: CGTGTCTCTGTGCCCTGCACTCGCCAGGCTCGGCGCATCGCCGTGCCGAGgtagatcgtg ... cttggtgcagCTCGGTGCGCTCTCGCGGCGCCCTGCAAGTGAAGGCCCTGTTCGGCGGTGG