1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTACGCAGTGGACCTGTTGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAGgtgaggggggtgggggccgacacccggccgactcgcgggcggctgcgtgaggggccgggcgtgttacgggcaggcgcttgcgcgctcgggttgtcctctc...
species | Chlamydomonas reinhardtii |
transcript | EDP07860 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAG CTTTGGTCCAGCCAGGTGGCTGCGTTCATCCGGGAGGTGGTGTCGCCGGCGEST: gi|16433063|gb|BI998289.1|BI998289
genomic: TGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAGgtgagggggg ... gtcactgcagCTTTGGTCCAGCCAGGTGGCTGCGTTCATCCGGGAGGTGGTGTCGCCGGCG
EST: TGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAG CTTTGGTCCAGCCAGGTGGCTGCGTT-ATCCGG-AGGGTGGTGTCGCCGGCEST: gi|23363418|gb|BU651238.1|BU651238
genomic: TGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAGgtgagggggg ... gtcactgcagCTTTGGTCCAGCCAGGTGGCTGCGTTCATCCGGGAGG-TGGTGTCGCCGGC
EST: TGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAG CTTTGGTCCAGCCAGGTGGCTGCGTTCATCCGGGAGGTGGTGTCGCCGGCG
genomic: TGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAGgtgagggggg ... gtcactgcagCTTTGGTCCAGCCAGGTGGCTGCGTTCATCCGGGAGGTGGTGTCGCCGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTACGCAGTGGACCTGTTGGGGTTCGGCTACAGCGAAAAGGCGCGGGAGGACTACACCAACGGCGAGgtgaggggggtgggggccgacacccggccgactcgcgggcggctgcgtgaggggccgggcgtgttacgggcaggcgcttgcgcgctcgggttgtcctctc
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgt