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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGCCAGTTGGCTTATGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggctctgtggtagcagacggggccaggttgtctgcaccattacatggaaacgaaggacaagatgcaaactggaagatgcatgccacaaagagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07860
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15701799|gb|BI726104.1|BI726104
EST:     TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG                         GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: gi|15694406|gb|BI718711.1|BI718711
EST:     TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG                         GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: gi|15703194|gb|BI727499.1|BI727499
EST:     TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG                         GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: gi|16433063|gb|BI998289.1|BI998289
EST:     TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG                         GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: gi|15697125|gb|BI721430.1|BI721430
EST:     TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG                         GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: gi|23363418|gb|BU651238.1|BU651238
EST:     TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG                         GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAGCCAGTTGGCTTATGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggctctgtggtagcagacggggccaggttgtctgcaccattacatggaaacgaaggacaagatgcaaactggaagatgcatgccacaaagagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaag