1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aatgacatgccgcacgcactggcgtgtccgacaccggggctcgacaccagccgtgctgaatagatttccccggcccgtcgcacacgcataacgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTACATCAAGGCAGGCCGGACG
species | Chlamydomonas reinhardtii |
transcript | EDP07860 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTEST: gi|15694406|gb|BI718711.1|BI718711
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTEST: gi|15703194|gb|BI727499.1|BI727499
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTEST: gi|16433063|gb|BI998289.1|BI998289
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTEST: gi|15697125|gb|BI721430.1|BI721430
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTEST: gi|23363418|gb|BU651238.1|BU651238
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
EST: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAG GCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
genomic: TGAGTTGGACGCCCGCAATGGGCTCCAGCGGATTAAGTACGAGGCCACAGgtgggttggc ... acgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACT
accagccgtgctgaatagatttccccggcccgtcgcacacgcataacgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTACATCAAGGCAGGCCGGACG
gcataac putative branch site (score: 3)
aatagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgacatgccgcacgcactggcgtgtccgacaccggggctcgacaccagccgtgctgaatagatttccccggcccgtcgcacacgcataacgcgcgcagGCTGGTACTACTGGGACTGGGAGGTCAACGGCCAGAAGCGCAAGGTGCACTACATCAAGGCAGGCCGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
aatgaca
- - - - - - cacgcac
- - - - - - - - - - - - - tccgaca
- - - - - - - - - - - - - - - - - - - - - gacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgca