1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAAGCACTACCAGCGCCGCGTGGAGACGATGATGTCGGTGGACGACATGATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtccttgacagcggaaggggcggggggcgggcagggccgaaacctggcgtttgggaggtgtaatgtcaggtgtaatcggctgttggtcctagcgtcaccagcgcaacgcagcggcagggtcgcaccgggtggcacgaacatcccaatctgcaaagtgcatgtcttgacacgctgcctcctctcctacgcag
species | Chlamydomonas reinhardtii |
transcript | EDP06453 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGNGCGTGCTGG-CAACAC CTACGTGATCTACATGTCGGACAACGGCTACCACCTGEST: gi|23361242|gb|BU649062.1|BU649062
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTG
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACAC CTACGTGATCTACATGTCGGACAACCGCTACCACCTGGGCAACCAEST: gi|23367531|gb|BU655349.1|BU655349
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCA
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACAC CTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCTEST: gi|161803050|gb|FC090274.1|FC090274
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCT
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACAC CTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCTEST: gi|15697649|gb|BI721954.1|BI721954
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCT
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACAC CTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCTEST: gi|15704319|gb|BI728608.1|BI728608
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCT
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACAC CTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCTEST: gi|16436894|gb|BM002114.1|BM002114
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCT
EST: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACAC CTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCT
genomic: ATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtcctt ... tcctacgcagCTACGTGATCTACATGTCGGACAACGGCTACCACCTGGGCAACCACGGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGCACTACCAGCGCCGCGTGGAGACGATGATGTCGGTGGACGACATGATTGAGTCGCTGGTCACCAAGCTGGAGACCCTGGGCGTGCTGGACAACACgtgagtccttgacagcggaaggggcggggggcgggcagggccgaaacctggcgtttgggaggtgtaatgtcaggtgtaatcggctgttggtcctagcgtcaccagcgcaacgcagcggcagggtcgcaccgggtggcacgaacatcccaatctgcaaagtgcatgtcttgacacgctgcctcctctcctacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA