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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccctgtgtggcctattgtgatagctttaaagcactactcaaatacagatggggctccgggggaggattgaaactcgaagcggacggaaggggcaaccaacgcacgtgttccactgccggcagGGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGCGGCAGGGGGCCGTTCATCAGCGACAAGCCCTTCCGGCCCACACAGCCCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP06449
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692888|gb|BI717193.1|BI717193
EST:     CTGGGCGCGACACATGGCTCGACAAAAGTCTACCCATCGGCACCATTCCG                         GGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGC
genomic: CTGGGCGCGACACATGGCTCGACAAAAGTCTACCCATCGGCACCATTCCGgtaagccctg ... ctgccggcagGGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGC
EST: gi|15692569|gb|BI716874.1|BI716874
EST:     CTGGGCGCGACACATGGCTCGACAAAAGTCTACCCATCGGCACCATTCCG                         GGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGC
genomic: CTGGGCGCGACACATGGCTCGACAAAAGTCTACCCATCGGCACCATTCCGgtaagccctg ... ctgccggcagGGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGC
EST: gi|14234142|gb|BG852974.1|BG852974
EST:     CTGGGCGCGACACATGGCTCGACAAAAGTCTACCCATCGGCACCATTCCG                         GGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGC
genomic: CTGGGCGCGACACATGGCTCGACAAAAGTCTACCCATCGGCACCATTCCGgtaagccctg ... ctgccggcagGGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaactcgaagcggacggaaggggcaaccaacgcacgtgttccactgccggcagGGTGACCGGTACGTCGACCCCGTCAACATCTCCAACCTGCTGGACAGCCGCGGCAGGGGGCCGTTCATCAGCGACAAGCCCTTCCGGCCCACACAGCCCT
                                        ttccact  CT-rich tract