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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTAGGCGATGGCGGACCAACCTGTCTTTGGAGTGTTTAAGGAGCCACCGGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCAgtaagttttgtttgtcttcgtctttgcttcatggctgccttaaaacgtgtgatgtcattggggacttggtggaccactcgggcattcaggaggtgcaacc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06449
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15692888|gb|BI717193.1|BI717193
EST:     GGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCA                         TCAAGAGCCGGACTCAGGGCAAGCAGTTCGTGATCCCTGACACCACCCAAA
genomic: GGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCAgtaagttttg ... ctacccgcagTCAAGAGCCGGACTCAGGGCAAGCAGTTCGTGATCCCTGACACCACCCAAA
EST: gi|15692569|gb|BI716874.1|BI716874
EST:     GGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCA                         TCAAGAGCCGGACTCAGGGCAAGCAGTTCGTGATCCCTGACACCACCCAAA
genomic: GGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCAgtaagttttg ... ctacccgcagTCAAGAGCCGGACTCAGGGCAAGCAGTTCGTGATCCCTGACACCACCCAAA
EST: gi|14234142|gb|BG852974.1|BG852974
EST:     GGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCA                         TCAAGAGCCGGACTCAGGGCAAGCAGTTCGTGATCCCTGACACCACCCAAA
genomic: GGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCAgtaagttttg ... ctacccgcagTCAAGAGCCGGACTCAGGGCAAGCAGTTCGTGATCCCTGACACCACCCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTAGGCGATGGCGGACCAACCTGTCTTTGGAGTGTTTAAGGAGCCACCGGCCCTGGCGGCCTCCGCGCCCTACCAGCCACCGAGCGAAGCGGCCCTCAgtaagttttgtttgtcttcgtctttgcttcatggctgccttaaaacgtgtgatgtcattggggacttggtggaccactcgggcattcaggaggtgcaacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcatt