1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcgtgatcggcaaactccgaatcatgtcgccgccccacggctgacaatatgttgcatttgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGCTGCCCCCAAGAAGGAGGTCGGCCCCAAGCGCGGCTCGCTG
species | Chlamydomonas reinhardtii |
transcript | EDP06390 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161810158|gb|FC099301.1|FC099301
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|23360611|gb|BU648431.1|BU648431
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7545792|gb|AW676280.1|AW676280
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|6548691|gb|AV394475.1|AV394475
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7546147|gb|AW676635.1|AW676635
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGANAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161813151|gb|FC104700.1|FC104700
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161815516|gb|FC101059.1|FC101059
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34982340|gb|CF556257.1|CF556257
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34990636|gb|CF564553.1|CF564553
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34981411|gb|CF555328.1|CF555328
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|49464531|gb|BP092444.1|BP092444
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34982117|gb|CF556034.1|CF556034
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7615650|gb|AW721090.1|AW721090
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|6549385|gb|AV395169.1|AV395169
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7615408|gb|AW720852.1|AW720852
genomic: CAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: AAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCNAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34992258|gb|CF566175.1|CF566175
genomic: AAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTTGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161794599|gb|FC081981.1|FC081981
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161813150|gb|FC104699.1|FC104699
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTGGGGTGAACATCGGGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161794598|gb|FC081980.1|FC081980
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGGGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|6547928|gb|AV393712.1|AV393712
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34982571|gb|CF556488.1|CF556488
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161810157|gb|FC099300.1|FC099300
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATTGCGG CCAAGCCCCAGCGCGTTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161806686|gb|FC088154.1|FC088154
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|22065127|gb|BQ816196.1|BQ816196
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34989859|gb|CF563776.1|CF563776
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34981650|gb|CF555567.1|CF555567
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|6549491|gb|AV395275.1|AV395275
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34990517|gb|CF564434.1|CF564434
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161811348|gb|FC098801.1|FC098801
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCGGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34989538|gb|CF563455.1|CF563455
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7546148|gb|AW676636.1|AW676636
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|22076564|gb|BQ825340.1|BQ825340
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|6550059|gb|AV395843.1|AV395843
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7615407|gb|AW720851.1|AW720851
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACC-AAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34987991|gb|CF561908.1|CF561908
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161811375|gb|FC098802.1|FC098802
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161792829|gb|FC077858.1|FC077858
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|49466646|gb|BP094559.1|BP094559
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34990516|gb|CF564433.1|CF564433
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|22076563|gb|BQ825339.1|BQ825339
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|161802437|gb|FC092976.1|FC092976
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34982572|gb|CF556489.1|CF556489
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7615649|gb|AW721089.1|AW721089
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCATATCCGGAAAATGCAGGCCCTGTCGTCTCGCGTGATCATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCACCGAGGAGGTTAAGGEST: gi|7616055|gb|AW721495.1|AW721495
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCG-CTGGTGGTCNCGCGCCGAGGAGGTTAAGEST: gi|7616056|gb|AW721496.1|AW721496
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTC-CGCGCCGAGGAGGTTAAG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34982570|gb|CF556487.1|CF556487
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CACC-AAACTCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|7709605|gb|AW773094.1|AW773094
genomic: CACCAAAAC-CGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34990634|gb|CF564551.1|CF564551
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|10126570|gb|BE725274.1|BE725274
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|14230493|gb|BG849309.1|BG849309
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34982116|gb|CF556033.1|CF556033
genomic: CAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|49458803|gb|BP086716.1|BP086716
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34992259|gb|CF566176.1|CF566176
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|34989537|gb|CF563454.1|CF563454
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGEST: gi|16073180|gb|BI875176.1|BI875176
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
EST: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGG CCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
genomic: CCACCAAAACCGGAAAATGCAGGCCCTGTCGTCTCGCGTGAACATCGCGGgtgcgtgatc ... tgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGG
actccgaatcatgtcgccgccccacggctgacaatatgttgcatttgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGCTGCCCCCAAGAAGGAGGTCGGCCCCAAGCGCGGCTCGCTG
ggctgac putative branch site (score: 3)
aatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgatcggcaaactccgaatcatgtcgccgccccacggctgacaatatgttgcatttgcgctgcagCCAAGCCCCAGCGCGCTCAGCGCCTGGTGGTCCGCGCCGAGGAGGTTAAGGCTGCCCCCAAGAAGGAGGTCGGCCCCAAGCGCGGCTCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG