1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caggccggcactgcccagtctggtgcctgttatactaacacgcatgcacatacacacgcgtgtggaccactccccttgtgatttcctctcacgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGCCTGGTGGGGCCGGTCGGCGACGAGAGCCAGTTCGAG
species | Chlamydomonas reinhardtii |
transcript | EDP06382 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCATCGCCTACGCCAACGGCTCCTATTTCGTAGTGTTCGATTCACTAAA GACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGEST: gi|14240975|gb|BG859791.1|BG859791
genomic: GGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAAgtgggtgggg ... acgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCG
EST: GGCATCGCCTACGCCAACGGCTCCTATTTCGTAGTGTTCGATTCACTAAA GACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGEST: gi|16438217|gb|BM003437.1|BM003437
genomic: GGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAAgtgggtgggg ... acgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCG
EST: GGCATCGCCTACGCCAACGGCTCCTATTTCGTAGTGTTCGATTCACTAAA GACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGEST: gi|9461077|gb|BE453553.1|BE453553
genomic: GGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAAgtgggtgggg ... acgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCG
EST: GGCATCGCCTACGCCAACGGCTCCTATTTCGTAGTGTTCGATTCACTAAA GACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGEST: gi|16430767|gb|BI995993.1|BI995993
genomic: GGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAAgtgggtgggg ... acgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCG
EST: GGCATCGCCTACGCCAACGGCTCCTATTTCGTAGTGTTCGATTCACTAAA GACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCG
genomic: GGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAAgtgggtgggg ... acgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCG
gcacatacacacgcgtgtggaccactccccttgtgatttcctctcacgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGCCTGGTGGGGCCGGTCGGCGACGAGAGCCAGTTCGAG
ctctcac putative branch site (score: 3)
tttcctctcac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggccggcactgcccagtctggtgcctgttatactaacacgcatgcacatacacacgcgtgtggaccactccccttgtgatttcctctcacgcacgcagGACGCTGGGCCGCGTGGATCTGCGCTTTTCGTTCCGCGGCCCAGAGAACCGCCTGGTGGGGCCGGTCGGCGACGAGAGCCAGTTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - -acacgca
- - - - - - - - - - - - - - - - - - - - - - tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - -acacacg