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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgtgtgtgggtgaagggtagccgttcatggagatggggctgattgatgaacgcagggggagggcctgcgtcttactgggaacagttgcaaaatcccccgccgcgccacccacacgaacctcgtttaccacacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP06382
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700143|gb|BI724448.1|BI724448
EST:     TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACCCTGCAG                         CGCACCCGCCGCTTTGAGGGCAGCGGCATCGCCTACGCCAACGGCTCCTAT
genomic: TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAGgtgtgtgtgt ... acacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTAT
EST: gi|14240975|gb|BG859791.1|BG859791
EST:     TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACCCTGCAG                         CGCACCCGCCGCTTTGAGGGCAGCGGCATCGCCTACGCCAACGGCTCCTAT
genomic: TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAGgtgtgtgtgt ... acacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTAT
EST: gi|16438217|gb|BM003437.1|BM003437
EST:     TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACCCTGCAG                         CGCACCCGCCGCTTTGAGGGCAGCGGCATCGCCTACGCCAACGGCTCCTAT
genomic: TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAGgtgtgtgtgt ... acacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTAT
EST: gi|9461077|gb|BE453553.1|BE453553
EST:     TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACCCTGCAG                         CGCACCCGCCGCTTTGAGGGCAGCGGCATCGCCTACGCCAACGGCTCCTAT
genomic: TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAGgtgtgtgtgt ... acacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTAT
EST: gi|16430767|gb|BI995993.1|BI995993
EST:     TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACCCTGCAG                         CGCACCCGCCGCTTTGAGGGCAGCGGCATCGCCTACGCCAACGGCTCCTAT
genomic: TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAGgtgtgtgtgt ... acacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTAT
EST: gi|15694570|gb|BI718875.1|BI718875
EST:     TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACCCTGCAG                         CGCACCCGCCGCTTTGAGGGCAGCGGCATCGCCTACGCCAACGGCTCCTAT
genomic: TCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAGgtgtgtgtgt ... acacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcaaaatcccccgccgcgccacccacacgaacctcgtttaccacacttgcagCGCACCCGCCGCTTTGAGGGTAGCGGTATCGCCTATGCCAACGGCTCCTATTACGTCGTGTTCGATTCACTCAA
     aaaat  TA-rich tract