1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gggctcatccttgcaggaaaatgtgcatgtaggcgcacacgccttcatccgtgctcgtaccgtttcctcccttgacacacgcactgccacatacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06382 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAA GCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACEST: gi|14240975|gb|BG859791.1|BG859791
genomic: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAAgtgaggaagc ... atacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCAC
EST: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAA GCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACEST: gi|16438217|gb|BM003437.1|BM003437
genomic: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAAgtgaggaagc ... atacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCAC
EST: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAA GCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACEST: gi|9461077|gb|BE453553.1|BE453553
genomic: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAAgtgaggaagc ... atacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCAC
EST: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAA GCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACEST: gi|16430767|gb|BI995993.1|BI995993
genomic: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAAgtgaggaagc ... atacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCAC
EST: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAA GCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTACEST: gi|15694570|gb|BI718875.1|BI718875
genomic: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAAgtgaggaagc ... atacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCAC
EST: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAA GCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCTAC
genomic: GACCCCGATTATGTGGATGACAAATTCTGCCATAAGAACCGCTACCGCAAgtgaggaagc ... atacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCAC
catccgtgctcgtaccgtttcctcccttgacacacgcactgccacatacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAG
ccttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggctcatccttgcaggaaaatgtgcatgtaggcgcacacgccttcatccgtgctcgtaccgtttcctcccttgacacacgcactgccacatacacacagGCGCACATTCAAGGTGGTTAAGGAAATGCCATTTGCAGGGCTCTTCCCCACCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - -tgtgcat
- - - - - - - - - - - - - - - - - -cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacg