1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctggtatctacaacccacccccctcatgtatgaaacgcaacgcccccttgagccccccccccccccgcgcccctgccccctgccccccaccgcccctcagCACACTGGTGCTCGAGGAGGACGCGGAGGCGCGCGACCGCGAGGCGGCGCGCATCCGCCGCGGCCAGTTCGTCAAGTCGTTTGGCGCGCAGAAGGCGCGC
species | Chlamydomonas reinhardtii |
transcript | EDP06364 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGGCCACCGAGGCGCTCAAGCGCAGCCTGCTGGCACAAGTGGGCGGCAG CACACTGGTGCTCGAEST: gi|34988140|gb|CF562057.1|CF562057
genomic: GAGGCCACCGAGGCGCTCAAGCGCAGCCTGCTGGCACAAGTGGGCGGCAGgtgagcgggc ... cgcccctcagCACACTGGTGCTCGA
EST: GAGGCCACCGAGGCGCTCAAGCGCAGCCTGCTGGCACAAGTGGGCGGCAG CACACTGGTGCTCGA
genomic: GAGGCCACCGAGGCGCTCAAGCGCAGCCTGCTGGCACAAGTGGGCGGCAGgtgagcgggc ... cgcccctcagCACACTGGTGCTCGA
ccttgagccccccccccccccgcgcccctgccccctgccccccaccgcccctcagCACACTGGTGCTCGAGGAGGACGCGGAGGCGCGCGACCGCGAGGCGGCGCGCATCCGCCGCGGCCAGTTCGTCAAGTCGTTTGGCGCGCAGAAGGCGCGC
ccccccccccccccgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggtatctacaacccacccccctcatgtatgaaacgcaacgcccccttgagccccccccccccccgcgcccctgccccctgccccccaccgcccctcagCACACTGGTGCTCGAGGAGGACGCGGAGGCGCGCGACCGCGAGGCGGCGCGCATCCGCCGCGGCCAGTTCGTCAAGTCGTTTGGCGCGCAGAAGGCGCGC
- -gtatcta
- - - - - caaccca
- - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - aaacgca