1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccggaggcgggggtagggtatggggctggggagtcgtgggctggggcgcatgtacgcagggaagggctcctggtgggctagcggcggccactgg...
species | Chlamydomonas reinhardtii |
transcript | EDP06364 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAGEST: gi|34991151|gb|CF565068.1|CF565068
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAGEST: gi|34991150|gb|CF565067.1|CF565067
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAGEST: gi|34980664|gb|CF554693.1|CF554693
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAGEST: gi|34993494|gb|CF567411.1|CF567411
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAGEST: gi|34988141|gb|CF562058.1|CF562058
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAGEST: gi|34988140|gb|CF562057.1|CF562057
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
EST: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG TTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
genomic: CGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccgg ... ccccccgcagTTGGAGCAGGAGCTGTACGCGCTGCCCTCCGACTTCACCACCCAGCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAGgtagggccggaggcgggggtagggtatggggctggggagtcgtgggctggggcgcatgtacgcagggaagggctcctggtgggctagcggcggccactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcatgt