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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccaagtcttgaccagcagcgacttccttctcggggcccgcagcaggagcagcggcttttcctgggaaatctgcgaagcctctctcctgaccacctaggggttgtccccgcttctcaaaccctccaaaccctaacgcacccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCCGGCACGGGCGTCGGCGCGCTGGCAATGGGCGGCGGGGGTCCGGGCATC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06364
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34988139|gb|CF562056.1|CF562056
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34991151|gb|CF565068.1|CF565068
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34991150|gb|CF565067.1|CF565067
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34980664|gb|CF554693.1|CF554693
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATCCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34980665|gb|CF554694.1|CF554694
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34993931|gb|CF567848.1|CF567848
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|15701860|gb|BI726165.1|BI726165
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34988141|gb|CF562058.1|CF562058
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|34988140|gb|CF562057.1|CF562057
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: gi|10778816|gb|AV635496.1|AV635496
EST:     TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG                         CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctaggggttgtccccgcttctcaaaccctccaaaccctaacgcacccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCCGGCACGGGCGTCGGCGCGCTGGCAATGGGCGGCGGGGGTCCGGGCATC
                                    ccctaac  putative branch site (score: 2)
                                            caccccc  CT-rich tract