Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgggaaatcccactgcattcatggcaggttgcatgaccccctcgccttgcctcaaccctgggtgccccctgcccctgctcttccgtgctgtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTGGAGCGGCTTGGATAAGCGGAGTAATGTAACGGTGGACGCGTGGCTAAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06293
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34986476|gb|CF560393.1|CF560393
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34991786|gb|CF565703.1|CF565703
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34993421|gb|CF567338.1|CF567338
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTTTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34984316|gb|CF558233.1|CF558233
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34991785|gb|CF565702.1|CF565702
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34993577|gb|CF567494.1|CF567494
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTTTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34984313|gb|CF558230.1|CF558230
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCNCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGT
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGC-CCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGT
EST: gi|34988131|gb|CF562048.1|CF562048
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|7593637|gb|AW707888.1|AW707888
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34987652|gb|CF561569.1|CF561569
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGTAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34984749|gb|CF558666.1|CF558666
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|22069085|gb|BQ818774.1|BQ818774
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34989769|gb|CF563686.1|CF563686
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34988212|gb|CF562129.1|CF562129
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34987650|gb|CF561567.1|CF561567
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAATAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34994008|gb|CF567925.1|CF567925
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34981802|gb|CF555719.1|CF555719
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34984747|gb|CF558664.1|CF558664
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAACCCAAGGTGGCGACCGCCTAAATTAGCAACTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|22076355|gb|BQ825131.1|BQ825131
EST:     GCGGTACATGAAAACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|22072091|gb|BQ821429.1|BQ821429
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34988132|gb|CF562049.1|CF562049
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTG
EST: gi|34986475|gb|CF560392.1|CF560392
EST:     GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGG                         GCTTTGAGGCCAAGCNCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGT
genomic: GCGGTACATGAAGACGCTGGCCCGGCGCTTCAAGAACGGCTTCCGCGAGGgtaggcgtgg ... gtgcgcgcagGCTCTGAGGCCAAGC-CCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggaaatcccactgcattcatggcaggttgcatgaccccctcgccttgcctcaaccctgggtgccccctgcccctgctcttccgtgctgtgcgcgcagGCTCTGAGGCCAAGCCCAAGGTGGCGACCGCCTAAATTAGCAGCTTGTGTGGAGCGGCTTGGATAAGCGGAGTAATGTAACGGTGGACGCGTGGCTAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - aatccca
- - - - - - - -gcattca
- - - - - - - - - - - - - - -ttgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - -ctcaacc