Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCAGCTACCACAACCAGAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaagaatcactgaagggcgaccttggacggcagctgggacagcggagctcagggctttgtcggcgccgcagccatctcgcagcggggctcgtcc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06293
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34986476|gb|CF560393.1|CF560393
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|22055800|gb|BQ812045.1|BQ812045
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCA
EST: gi|34991786|gb|CF565703.1|CF565703
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34993421|gb|CF567338.1|CF567338
EST:     GAAGCACGTTTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34984316|gb|CF558233.1|CF558233
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34991785|gb|CF565702.1|CF565702
EST:     GAAGCACGTTTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         TCCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCCCCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34993577|gb|CF567494.1|CF567494
EST:     GAAGCACGTTTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34984313|gb|CF558230.1|CF558230
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34988131|gb|CF562048.1|CF562048
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|7593637|gb|AW707888.1|AW707888
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34987652|gb|CF561569.1|CF561569
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34984749|gb|CF558666.1|CF558666
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|22069085|gb|BQ818774.1|BQ818774
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34989769|gb|CF563686.1|CF563686
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34988212|gb|CF562129.1|CF562129
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34994008|gb|CF567925.1|CF567925
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34981802|gb|CF555719.1|CF555719
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34984747|gb|CF558664.1|CF558664
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         TCCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|22076355|gb|BQ825131.1|BQ825131
EST:     AAAGCACGTTTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAAAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|22072091|gb|BQ821429.1|BQ821429
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34988132|gb|CF562049.1|CF562049
EST:     GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA
EST: gi|34986475|gb|CF560392.1|CF560392
EST:     GAAGCACGTTTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTT                         ACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCCCCGGCTCCGGCCGCA
genomic: GAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaag ... gggattgcagACCAGTGGGGGCAGAAGGCCATTGGCCGCAAGACCACCGGCTCCGGCCGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCAGCTACCACAACCAGAAGCACGTCTGCTCGGCGTGCGGCTACCCTGCTGCCCGCAAGCGGACTTgtgagtgaagaatcactgaagggcgaccttggacggcagctgggacagcggagctcagggctttgtcggcgccgcagccatctcgcagcggggctcgtcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctttgt