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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgctgccgccgcatttagacgaaattcgcgctgctggggcctgctctgagtcttgtgctgatcctttgcctgtgaaatgccttacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06293
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34986476|gb|CF560393.1|CF560393
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|22055800|gb|BQ812045.1|BQ812045
EST:     CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34991786|gb|CF565703.1|CF565703
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34993421|gb|CF567338.1|CF567338
EST:     CAAACCAAACCCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCCCCA
genomic: CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34984316|gb|CF558233.1|CF558233
EST:     AGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: AGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34991785|gb|CF565702.1|CF565702
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTTCCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34993577|gb|CF567494.1|CF567494
EST:     GGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34984313|gb|CF558230.1|CF558230
EST:     AGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: AGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34984243|gb|CF558160.1|CF558160
EST:     GCAAAGATGGGCAAGAA-GGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34988131|gb|CF562048.1|CF562048
EST:     AAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: AAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|7593637|gb|AW707888.1|AW707888
EST:     CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34987652|gb|CF561569.1|CF561569
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34984749|gb|CF558666.1|CF558666
EST:     CAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: CAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|22069085|gb|BQ818774.1|BQ818774
EST:     CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: CAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34989769|gb|CF563686.1|CF563686
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34988212|gb|CF562129.1|CF562129
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34994008|gb|CF567925.1|CF567925
EST:     GGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34981802|gb|CF555719.1|CF555719
EST:     AGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: AGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34984747|gb|CF558664.1|CF558664
EST:     CAAACGCAAAGATGGGCAAGAAGGGCAAGGGTTCCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: CAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|22076355|gb|BQ825131.1|BQ825131
EST:     GCAAAAATGGGCAAAAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAAACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|22072091|gb|BQ821429.1|BQ821429
EST:     CAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: CAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34988132|gb|CF562049.1|CF562049
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34984242|gb|CF558159.1|CF558159
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGCCGTTGCGGACGCACCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA
EST: gi|34986475|gb|CF560392.1|CF560392
EST:     GCAAAGATGGGCAAGAAGGGCAAGGGTCCCGGAAGCTTCG                         GTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCCCCA
genomic: GCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgc ... tgccttacagGTAAGCGCCGCAACAAGACGCACACTCTGTGCCGTCGTTGCGGTCGCACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCAAACCAAACGCAAAGATGGGCAAGAAGGGCAAGGGTACCGGAAGCTTCGgtaagtgtgctgccgccgcatttagacgaaattcgcgctgctggggcctgctctgagtcttgtgctgatcctttgcctgtgaaatgccttacag

- - - - - -  GCAAAG
- - - - - - - - AAGATG
- - - - - - - - - - -  GCAAGA
- - - - - - - - - - - -  AAGAAG