1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccgagttcacatcgcacatttgcgctaccctgagcagggtattaatgttctttgtcggcatacgtctccacggtgtactcttaaagggcatggagcacttgttcaaaagacccagactcccaccgcctggtgcaggacaccgtaacatacccgccctccgtgcccactcgccactgtttgccacacaaag
species | Chlamydomonas reinhardtii |
transcript | EDP05612 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAG GCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCTEST: gi|49470734|gb|BP098595.1|BP098595
genomic: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccg ... ccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
EST: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAG GCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCTEST: gi|10793774|gb|AV631140.1|AV631140
genomic: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccg ... ccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
EST: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAG GCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
genomic: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccg ... ccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccgagttcacatcgcacatttgcgctaccctgagcagggtattaatgttctttgtcggcatacgtctccacggtgtactcttaaagggcatggagcacttgttcaaaagacccagactcccaccgcctggtgcaggacaccgtaacatacccgccctccgtgcccactcgccactgtttgccacacaaag
- - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG