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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTTGCGGGACTGAGCGCGGAGGAGGCTGCCCTTATTAATGACGTGCTGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGGgtgagagcgaacgttcaagcgtcgcgacaagcgctctcgctgtgaacggcctgctcacctggcgctcgttgatgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05612
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10789828|gb|AV627193.1|AV627193
EST:     TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGG                         GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
genomic: TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGGgtgagagcga ... tgatgtgcagGCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
EST: gi|49465448|gb|BP093361.1|BP093361
EST:     TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGG                         GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
genomic: TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGGgtgagagcga ... tgatgtgcagGCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
EST: gi|49467549|gb|BP095462.1|BP095462
EST:     TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGG                         GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
genomic: TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGGgtgagagcga ... tgatgtgcagGCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
EST: gi|49470734|gb|BP098595.1|BP098595
EST:     TGACGCGGCTTAGCATNGGTCATAACGCACAAGCGGTGCCTGGTTTGCGG                         GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
genomic: TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGGgtgagagcga ... tgatgtgcagGCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
EST: gi|10793774|gb|AV631140.1|AV631140
EST:     TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGG                         GCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG
genomic: TGACGCGGCTTAGCATTGGTCATAACGCACAAGCGGTGCCTGGTTTGCGGgtgagagcga ... tgatgtgcagGCACCACATGTATCGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAG