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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgccgagttcacatcgcacatttgcgctaccctgagcagggtattaatgttctttgtcggcatacgtctccacggtgtactcttaaagggcatggagcacttgttcaaaagacccagactcccaccgcctggtgcaggacaccgtaacatacccgccctccgtgcccactcgccactgtttgccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCTGCCCGCGCTTCCTTAGCAGCACTCTCAACCTACCCGTACGGTGGCGCAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05612
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467549|gb|BP095462.1|BP095462
EST:     CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAG                         GCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
genomic: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccg ... ccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
EST: gi|49470734|gb|BP098595.1|BP098595
EST:     CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAG                         GCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
genomic: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccg ... ccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
EST: gi|10793774|gb|AV631140.1|AV631140
EST:     CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAG                         GCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT
genomic: CGCAACATAGTGCCGACCCAGAGCTGGCCGAACTGGAGCTCGCAGAGCAGgtgcgtgccg ... ccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaccgtaacatacccgccctccgtgcccactcgccactgtttgccacacaaagGCAATAGAGCAGGAGCTGCGGGGCCTAGATAACGGCACAGCTCCTTCATCTGCCCGCGCTTCCTTAGCAGCACTCTCAACCTACCCGTACGGTGGCGCAC
    ccgtaac  putative branch site (score: 3)
       taacata  TA-rich tract