Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atccctgggcggattgcccagcgccactggaactgcttaccacgtccttgcgacctcaccccgcaccactgtccgctccgcccgccccgtcgccccgcagCAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCTCATCAGCGGCCTGGCGGGTGCCGACCTGCGCCCCATGTCCCTGGGTCTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05611
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23360823|gb|BU648643.1|BU648643
EST:     AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAG                         CAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
genomic: AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAGgtgagcccgc ... cgccccgcagCAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
EST: gi|8400990|gb|BE056624.1|BE056624
EST:     AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAG                         CAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
genomic: AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAGgtgagcccgc ... cgccccgcagCAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
EST: gi|6543402|gb|AV389186.1|AV389186
EST:     AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAG                         CAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
genomic: AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAGgtgagcccgc ... cgccccgcagCAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
EST: gi|15702664|gb|BI726969.1|BI726969
EST:     AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAG                         CAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT
genomic: AAGCTGGGCAGCATTGTGCAGGAGAAGCTGGGCCTGAACGTGCTGTGGAGgtgagcccgc ... cgccccgcagCAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgcgacctcaccccgcaccactgtccgctccgcccgccccgtcgccccgcagCAACCAAGTTCTGGAGCTGAGCCGCGGCATTCGTAGCCAGCTGACCGGCCTCATCAGCGGCCTGGCGGGTGCCGACCTGCGCCCCATGTCCCTGGGTCTG
       acctcac  putative branch site (score: 3)
                                       ccccgtc  putative PPT