Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgtcgcttgtgttggctttggcgcggggtagtgagtgcgcgacggctgacggcggcggccggctcgcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05611
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23360823|gb|BU648643.1|BU648643
EST:     GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAA                         GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
genomic: GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAAgtgagtgtgt ... gcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
EST: gi|8400990|gb|BE056624.1|BE056624
EST:     GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAA                         GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
genomic: GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAAgtgagtgtgt ... gcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
EST: gi|10785607|gb|AV642279.1|AV642279
EST:     GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAA                         GACCTCGCCAGCGACTTCGCGACCCTTGAGGCG
genomic: GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAAgtgagtgtgt ... gcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCG
EST: gi|6543402|gb|AV389186.1|AV389186
EST:     GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAA                         GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
genomic: GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAAgtgagtgtgt ... gcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
EST: gi|15702664|gb|BI726969.1|BI726969
EST:     GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAA                         GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
genomic: GCTTTGCCCTATTTAAAGTGCTGAAGGAGAAGAAGCTGGAGGAGGCGGAAgtgagtgtgt ... gcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcggggtagtgagtgcgcgacggctgacggcggcggccggctcgcttccacagGACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG
                       ggctgac  putative branch site (score: 3)
                                          ctcgcttcc  putative PPT