1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaggtttgctctggaattttcggcgtgaccatgcggccaccagcgacggcgcactgaacacatcacatggctttgcagGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTTGCAGCTGCCACTGCTCTGGTGGATAGCAAGCTCAGCAAGG
species | Chlamydomonas reinhardtii |
transcript | EDP05611 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG GTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTTEST: gi|8400990|gb|BE056624.1|BE056624
genomic: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAGgtaaggtttg ... ggctttgcagGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTT
EST: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG GTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTTEST: gi|6543402|gb|AV389186.1|AV389186
genomic: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAGgtaaggtttg ... ggctttgcagGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTT
EST: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG GTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTTEST: gi|15702664|gb|BI726969.1|BI726969
genomic: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAGgtaaggtttg ... ggctttgcagGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTT
EST: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAG GTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTT
genomic: GACCTCGCCAGCGACTTCGCGACCCTTGAGGCGGCTCAAAAGgtaaggtttg ... ggctttgcagGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtttgctctggaattttcggcgtgaccatgcggccaccagcgacggcgcactgaacacatcacatggctttgcagGTTGTCAAGCTGAAGGCTTTCAGCAAGTTTGAGAACACGACGGAGGCGCTTGCAGCTGCCACTGCTCTGGTGGATAGCAAGCTCAGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG