Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaggagcagtgcgttacagccgtactgctttgtcgtgacggtgcatcaactcatgcacacgggctgtgaaccctgcgatggacccagagtctgcttgctgcgtccgggcactggctccagcgctctgcctctcagtgccctccctgcgcttccgttgacgctctgcaccgctcactgcctgccatgacttgcagCTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCCCGCCACCTGCATCAGCACTGACCCTCACTGACGGCACGGCGGCGACAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05593
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8287227|gb|BE024786.1|BE024786
EST:     ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGG                         CTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCC
genomic: ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGGgtaggaggag ... tgacttgcagCTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCC
EST: gi|8287421|gb|BE024980.1|BE024980
EST:     ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGG                         CTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCC
genomic: ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGGgtaggaggag ... tgacttgcagCTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCC
EST: gi|10779183|gb|AV635863.1|AV635863
EST:     ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGG                         CTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGC
genomic: ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGGgtaggaggag ... tgacttgcagCTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGC
EST: gi|10770050|gb|AV620875.1|AV620875
EST:     ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGG                         CTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCC
genomic: ACCTTGCCAGCAAGGGCGTGGCAGACATCCTCGCCAGCATCGTGCAGCGGgtaggaggag ... tgacttgcagCTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccctgcgcttccgttgacgctctgcaccgctcactgcctgccatgacttgcagCTGGCTGCAGAGCGGCCGGAGGACGTGCCGGGTTTCATCGCCTCCTACGCCCGCCACCTGCATCAGCACTGACCCTCACTGACGGCACGGCGGCGACAGC
                             cgctcac  putative branch site (score: 3)