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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctggaccaaacgctgggcgactgcgacatgccacacctttcgtgcatgctttcccctacctacacccctggcattgctgcacctaacccctgccaactcccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGTCGCCACGGCTGAGGACGGGTCGGGGGTGGCAGTGGTCCACCCGGACGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05593
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8287227|gb|BE024786.1|BE024786
EST:     ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACAT                         GTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
genomic: ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACATgtgagtctgg ... ccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
EST: gi|8287421|gb|BE024980.1|BE024980
EST:     ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACAT                         GTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
genomic: ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACATgtgagtctgg ... ccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
EST: gi|10779183|gb|AV635863.1|AV635863
EST:     ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACAT                         GTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
genomic: ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACATgtgagtctgg ... ccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
EST: gi|10770050|gb|AV620875.1|AV620875
EST:     ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACAT                         GTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
genomic: ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACATgtgagtctgg ... ccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
EST: gi|10794318|gb|AV631684.1|AV631684
EST:     ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACAT                         GTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT
genomic: ATGGTTGTGTCGGTGCTTCATAACAAACCTGCATCCGTGGAGCAGCACATgtgagtctgg ... ccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctacctacacccctggcattgctgcacctaacccctgccaactcccatcaacagGTTGAAGCACCTAGTGGGCAAAGTGAAGCAATCATCAGAGGAGGCGGCCGTCGCCACGGCTGAGGACGGGTCGGGGGTGGCAGTGGTCCACCCGGACGAG
                          acctaac  putative branch site (score: 2)
                                          ctcccatc  putative PPT