1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtttgtccgcctgtttctcacacccatgcgacttgctgcctcactggtggacgtttctgtgcggtggcttcggctgcgggcaccactttctcatatgcagGTGAAGACTGTGAAGGCGTTCCCGGAGCTGCTGGCATGTGACGCTGAGACCAGGCTGCGTGCCAACACAGCGCAGCTCCAGAAGCAATGGCGGATGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP05578 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGCGCTCGCGTTCCTGGCCGCGGACCTGGGCATGAGCACCGAGGAGCAG GTGAAGACTGTGAAGGCGTTCCCGGAGCTGCTGGCATGTGACGCTGAGACC
genomic: AGGCGCTCGCGTTCCTGGCCGCGGACCTGGGCATGAGCACCGAGGAGCAGgtaggtacat ... tcatatgcagGTGAAGACTGTGAAGGCGTTCCCGGAGCTGCTGGCATGTGACGCTGAGACC
ggtggacgtttctgtgcggtggcttcggctgcgggcaccactttctcatatgcagGTGAAGACTGTGAAGGCGTTCCCGGAGCTGCTGGCATGTGACGCTGAGACCAGGCTGCGTGCCAACACAGCGCAGCTCCAGAAGCAATGGCGGATGCAG
ccactttctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccgcctgtttctcacacccatgcgacttgctgcctcactggtggacgtttctgtgcggtggcttcggctgcgggcaccactttctcatatgcagGTGAAGACTGTGAAGGCGTTCCCGGAGCTGCTGGCATGTGACGCTGAGACCAGGCTGCGTGCCAACACAGCGCAGCTCCAGAAGCAATGGCGGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
gtttgtc
- - - - - -tgtttct
- - - - - - - - - -acaccca
- - - - - - - - - - - - - - - - - - - cctcact
- - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgt