1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agttccaaatactctagctgtttgctgtaggtctgtgcccaaacctgcggccacatggcggtcctggtttcattgcttggatcctgatgctgcctcacagGTGGAGGAGCTGCCCTCCCCCGACCAGGTGTGCGAGGCGCTCGCGTTCCTGGCCGCGGACCTGGGCATGAGCACCGAGGAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP05578 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCGCGGGCCTTCGGCTGGACAACACAGGCGTTCTGGCGCAGAGAAAAG GTGGAGGAGCTGCCCTCCCCCGACCAGGTGTGCGAGGCGCTCGCGTTCCTG
genomic: TGGCGCGGGCCTTCGGCTGGACAACACAGGCGTTCTGGCGCAGAGAAAAGgtgcgaggac ... tgcctcacagGTGGAGGAGCTGCCCTCCCCCGACCAGGTGTGCGAGGCGCTCGCGTTCCTG
tgcggccacatggcggtcctggtttcattgcttggatcctgatgctgcctcacagGTGGAGGAGCTGCCCTCCCCCGACCAGGTGTGCGAGGCGCTCGCGTTCCTGGCCGCGGACCTGGGCATGAGCACCGAGGAGCAG
tcctgat putative branch site (score: 3)
ctgcctc CT-rich tract
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttccaaatactctagctgtttgctgtaggtctgtgcccaaacctgcggccacatggcggtcctggtttcattgcttggatcctgatgctgcctcacagGTGGAGGAGCTGCCCTCCCCCGACCAGGTGTGCGAGGCGCTCGCGTTCCTGGCCGCGGACCTGGGCATGAGCACCGAGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - aaatact
- - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - gtctgtg
- - - - - - - - - - - - - - - - - - -cccaaac
- - - - - - - - - - - - - - - - - - - - - - - - - ccacatg