1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcctgcacgcgccccatgtggcgccctactcccgctgcgctgctgcccctgcgctgaataacgctgctgttggtctcgccacgacgccgcaccacgcagTTAATTCCGGACGAGTTCGAGTTTGACACGAGTGACGATAATAGCTGGATATCAATGGACCAGACCACTCGCATCCAGGGCGGCACGCACGTGCGTATAC
species | Chlamydomonas reinhardtii |
transcript | EDP04615 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGCTTCTTCGCCCAGGCAGGGCCGCTACAACTGTTCGTCACACAGCAT TTAATTCCGGACGAGTTCGAGTTTGACACGAGTGACGATAATAGCTGGATAEST: gi|9210848|gb|BE337763.1|BE337763
genomic: TGGGCTTCTTCGCCCAGGCAGGGCCGCTACAACTGTTCGTCACACAGCATgtgagtaatg ... caccacgcagTTAATTCCGGACGAGTTCGAGTTTGACACGAGTGACGATAATAGCTGGATA
EST: TGGGCTNCTTCGCCCAGGCAGGGCCGCTACAACTGTTCGTCACACAGCAT TTAATTCCGGACGAGCTCGAGTTTGACACGAGTGACGATAATAGCT
genomic: TGGGCTTCTTCGCCCAGGCAGGGCCGCTACAACTGTTCGTCACACAGCATgtgagtaatg ... caccacgcagTTAATTCCGGACGAGTTCGAGTTTGACACGAGTGACGATAATAGCT
gcccctgcgctgaataacgctgctgttggtctcgccacgacgccgcaccacgcagTTAATTCCGGACGAGTTCGAGTTTGACACGAGTGACGATAATAGCTGGATATCAATGGACCAGACCACTCGCATCCAGGGCGGCACGCACGTGCGTATAC
gaataac putative branch site (score: 2)
tgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctgcacgcgccccatgtggcgccctactcccgctgcgctgctgcccctgcgctgaataacgctgctgttggtctcgccacgacgccgcaccacgcagTTAATTCCGGACGAGTTCGAGTTTGACACGAGTGACGATAATAGCTGGATATCAATGGACCAGACCACTCGCATCCAGGGCGGCACGCACGTGCGTATAC
- - - cacgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt