1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGTTCTACTTCCTGACGCTCAGCAAGTCACTGGACATCCATCCTAAGCACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgctagtccagcgagcacttggcgggaagaccttttgggggaaggtcggcacgggggtcagggagctcggagcccggctgggcctacgtgcccc...
species | Chlamydomonas reinhardtii |
transcript | EDP04615 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGEST: gi|10773466|gb|AV624289.1|AV624289
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATGGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGEST: gi|15370015|gb|BI529441.1|BI529441
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGEST: gi|9210848|gb|BE337763.1|BE337763
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTTCTACTTCCTGACGCTCAGCAAGTCACTGGACATCCATCCTAAGCACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgctagtccagcgagcacttggcgggaagaccttttgggggaaggtcggcacgggggtcagggagctcggagcccggctgggcctacgtgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacgtgc