1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gccgccacactactcgccctgctcctctacccgcaatgagtgcaatcgctggtgcaagtcgtgcttacggacaaaaccacgcatacacgcaaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGGTGGACGACATTGGCCGG
species | Chlamydomonas reinhardtii |
transcript | EDP04615 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGEST: gi|10773466|gb|AV624289.1|AV624289
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATGGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGEST: gi|15370015|gb|BI529441.1|BI529441
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGEST: gi|9210848|gb|BE337763.1|BE337763
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
EST: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAG ACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
genomic: ACTTTGGATCTAAGCTGCGGGAGGTCATTCGTGAGAAGCTTATTGCGGAGgtatgccgct ... aaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAG
tcgctggtgcaagtcgtgcttacggacaaaaccacgcatacacgcaaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGGTGGACGACATTGGCCGG
tgcttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgccacactactcgccctgctcctctacccgcaatgagtgcaatcgctggtgcaagtcgtgcttacggacaaaaccacgcatacacgcaaacgtacagACGGAAGGTACCTGCACTGGCAAGTACGGCTATGTGGTGGCGGTAACCAAGGTGGACGACATTGGCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - ccacact
- - - - - - - - - - - - - - acccgca
- - - - - - - - - - - - - - - - - -atgagtg
- - - - - - - - - - - - - - - - - - - - - caatcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacacg