1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacaccacaacatgccacccccagcctctccaccgtatgtcagcaacaccgaactcgcccgcttccgcctgtcgctcttccctgcccctccggcccgcagATCAAGGGCACCCTGTGGGGCCTGTCCACGCTGTTCACCAGCCTGTGGGACTGGCCGCTGCGCAAGCTGAGCGGCGGGATGCTGGGCGGCGCCACCAGGC
species | Chlamydomonas reinhardtii |
transcript | EDP04581 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGCAACCTGGACGGCTACACCGGCAAGGGCTTCGGCACCGGGCAGCAG ATCAAGGGCACCCTGTGGGGCCTGTCCACGCTGTTCACCAGCCTGTGGGAC
genomic: TGTGTAACCTGGACGGCTACACCGGCAAGGGGTTCGGCACCGGGCAGCAGgtggggcccg ... cggcccgcagATCAAGGGCACCCTGTGGGGCCTGTCCACGCTGTTCACCAGCCTGTGGGAC
acaccgaactcgcccgcttccgcctgtcgctcttccctgcccctccggcccgcagATCAAGGGCACCCTGTGGGGCCTGTCCACGCTGTTCACCAGCCTGTGGGACTGGCCGCTGCGCAAGCTGAGCGGCGGGATGCTGGGCGGCGCCACCAGGC
cccgcttccgcctgtc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaccacaacatgccacccccagcctctccaccgtatgtcagcaacaccgaactcgcccgcttccgcctgtcgctcttccctgcccctccggcccgcagATCAAGGGCACCCTGTGGGGCCTGTCCACGCTGTTCACCAGCCTGTGGGACTGGCCGCTGCGCAAGCTGAGCGGCGGGATGCTGGGCGGCGCCACCAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -cacaaca
- - - - - - - - accccca
- - - - - - - - - - - - - - - - -cgtatgt
- - - - - - - - - - - - - - - - - - - - -agcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - -aactcgc