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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAGACGTTCCCGAAGCTCGACATCCTGGTCAACAACGCTGGTGTGTCCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAGgtgcgagggcaagccggggtaacgcgcggggtggggtgcggccgtgaggggctgtcggagcgtgccgcgtggcgctgcgcttcgtgccgtgcgcccggcactcgcacacagacataatgcaacacttgcgacccgctgaacccaccgactgccacgccacgccacgcgccgcgcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04581
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22061660|gb|BQ814371.1|BQ814371
EST:     CCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAG                         ACCAACCACCTGGGCCCCTACACGCTCACGCGGCTGCTGGAGAAGAAGCTG
genomic: CCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAGgtgcgagggc ... gcgcgcgcagACCAACCACCTGGGCCCCTACACGCTCACGCGGCTGCTGGAGAAGAAGCTG
EST: gi|161808419|gb|FC096711.1|FC096711
EST:     CCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAG                         ACCAACCACCTGGGCCCCTACACGCTCACGCGGTTGCTGGAGAAGAAGCTG
genomic: CCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAGgtgcgagggc ... gcgcgcgcagACCAACCACCTGGGCCCCTACACGCTCACGCGGCTGCTGGAGAAGAAGCTG
EST: gi|16434106|gb|BI999332.1|BI999332
EST:     CCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAG                         ACCAACCACCTGGGCCCCTACACGCTCACGCGGCTGCTGGAGAAGAAGCTG
genomic: CCTTCATGCAGCGCACCATGACGCCGGAGGGTGTGGGCGGCATCGCCCAGgtgcgagggc ... gcgcgcgcagACCAACCACCTGGGCCCCTACACGCTCACGCGGCTGCTGGAGAAGAAGCTG