1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcttagatcgccatggaacgcacttttcataacattcagcaatccgatgtccacctggtagcggtcaacctgctgaactctcaactggcgaaattcccgcgccttcttggacagGTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGGATGTGGTGAAGCAGATCCAGGAGCGGTACCCCGGCGCCAAGCTGGTGGT
species | Chlamydomonas reinhardtii |
transcript | EDP04581 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCGGCGCAACCAGCGGCATCGGCCTCGAAACCGCCGCGGCGTTGGCAA GTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGGEST: gi|16434106|gb|BI999332.1|BI999332
genomic: GACCGGCGCAACCAGCGGCATCGGCCTCGAAACCGCCGCGGCGTTGGCAAgtgagcttag ... tcttggacagGTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGG
EST: GGCGCAACCAGCGGCATCGGCCTCGAAACCGCCGCGGCGTTGGCAA GTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGG
genomic: GGCGCAACCAGCGGCATCGGCCTCGAAACCGCCGCGGCGTTGGCAAgtgagcttag ... tcttggacagGTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGG
agcggtcaacctgctgaactctcaactggcgaaattcccgcgccttcttggacagGTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGGATGTGGTGAAGCAGATCCAGGAGCGGTACCCCGGCGCCAAGCTGGTGGT
ttcccgcgccttctt CT-rich tract
aaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttagatcgccatggaacgcacttttcataacattcagcaatccgatgtccacctggtagcggtcaacctgctgaactctcaactggcgaaattcccgcgccttcttggacagGTCGGGGGGCGAACGTGATTCTGGGCGTGCGCAACACTAAAGCTGCGGAGGATGTGGTGAAGCAGATCCAGGAGCGGTACCCCGGCGCCAAGCTGGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG