Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCTCACGTCTGTGTTCGGCTTCAACCTGGCGCTGACGGGCAAGGCGGACCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACGgtggggaccagggaggctgtgggctcgggagctgggttgggcggcaggtgctcatgggactggcagtgaactgatgcaggcgggacgtggcggtggataccctgacgtggtccggtgttactcacctctgcctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04567
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161816807|gb|FC101332.1|FC101332
EST:     CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACG                         GCTGGAAGTTCTGGATCCCTGCGGCTTCCATCAACTTTTATGCCGTACCGC
genomic: CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACGgtggggacca ... ctgcctgcagGCTGGAAGTTCTGGATCCCTGCGGCTTCCATAAACTTTTATGCCGTACCGC
EST: gi|161811108|gb|FC097170.1|FC097170
EST:     CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACG                         GCTGGAAGTTCTGGATCCCTGCGGCTTCCATCAACTTTTATGCCGTACCGC
genomic: CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACGgtggggacca ... ctgcctgcagGCTGGAAGTTCTGGATCCCTGCGGCTTCCATAAACTTTTATGCCGTACCGC
EST: gi|161813296|gb|FC103103.1|FC103103
EST:     CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACG                         GCTGGAAGTTCTGGATCCCTGCGGCTTCCATCAACTTTTATGCCGTACCGC
genomic: CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACGgtggggacca ... ctgcctgcagGCTGGAAGTTCTGGATCCCTGCGGCTTCCATAAACTTTTATGCCGTACCGC
EST: gi|8933179|gb|BE227940.1|BE227940
EST:     CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACG                         GNTGGAAGTTCTGGATCCCTGCCGCTTCCATAAACTTTTATGCCGTACCGC
genomic: CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACGgtggggacca ... ctgcctgcagGCTGGAAGTTCTGGATCCCTGCGGCTTCCATAAACTTTTATGCCGTACCGC
EST: gi|16435172|gb|BM000392.1|BM000392
EST:     CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACG                         GCTGGAAGTTCTGGATCCCTGC
genomic: CCTCATCGGGGACAAAATCCGCAACGACCTCTGGCCGACCATGCAGAACGgtggggacca ... ctgcctgcagGCTGGAAGTTCTGGATCCCTGC