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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcggacctgcacacgcctcgaaccgcgatggctgcactcccggcggcctgctgcccccgggcttccccgcccccaacttatcaacatgcctctatttgctaacctcgctgctggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGCTCGGCGACCTGTTGGCACAGGGCCTGCTAAGCCAGACCGCCGCGCGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04567
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15704522|gb|BI728827.1|BI728827
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|15370489|gb|BI529915.1|BI529915
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|10768348|gb|AV619173.1|AV619173
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|161816807|gb|FC101332.1|FC101332
EST:     GCTCAGCGGCCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|10127295|gb|BE725999.1|BE725999
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|15702493|gb|BI726798.1|BI726798
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|16437039|gb|BM002259.1|BM002259
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|161811108|gb|FC097170.1|FC097170
EST:     GCTCAGCGGCCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|161813296|gb|FC103103.1|FC103103
EST:     GCTCAGCGGCCGCGCCCGGTGGCCAGCCAAGCTATTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|8933179|gb|BE227940.1|BE227940
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|16435172|gb|BM000392.1|BM000392
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: gi|49461389|gb|BP089302.1|BP089302
EST:     GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG                         GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcccccaacttatcaacatgcctctatttgctaacctcgctgctggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGCTCGGCGACCTGTTGGCACAGGGCCTGCTAAGCCAGACCGCCGCGCGCG
                              tgctaac  putative branch site (score: 1)
        aacttat  TA-rich tract