1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTCAACCGCATCCGTAAGACGAGGAGAAATGACATTCGGCGTTCAGCAAGCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggacctgcacacgcctcgaaccgcgatggctgcactcccggcggcctgctgcccccgggcttccccgcccccaacttatcaacatgcctctatttgctaacctcgctgctggtcgccag
species | Chlamydomonas reinhardtii |
transcript | EDP04567 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|15370489|gb|BI529915.1|BI529915
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|10768348|gb|AV619173.1|AV619173
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|161816807|gb|FC101332.1|FC101332
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGGCCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|10127295|gb|BE725999.1|BE725999
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|15702493|gb|BI726798.1|BI726798
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|16437039|gb|BM002259.1|BM002259
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|161811108|gb|FC097170.1|FC097170
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGGCCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|161813296|gb|FC103103.1|FC103103
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGGCCGCGCCCGGTGGCCAGCCAAGCTATTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|8933179|gb|BE227940.1|BE227940
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|16435172|gb|BM000392.1|BM000392
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGGEST: gi|49461389|gb|BP089302.1|BP089302
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
EST: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCG GGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
genomic: GCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggac ... tggtcgccagGGCTGGGAGGCGCCTCTAAAGGCAGCCGTGACGTCGGGCACGTTGTCGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCAACCGCATCCGTAAGACGAGGAGAAATGACATTCGGCGTTCAGCAAGCTCAGCGACCGCGCCCGGTGGCCAGCCAAGCTACTGGCAGAAAGTCGCGgtgagcggacctgcacacgcctcgaaccgcgatggctgcactcccggcggcctgctgcccccgggcttccccgcccccaacttatcaacatgcctctatttgctaacctcgctgctggtcgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT