1 5' 3' | 2 5' 3' |
CTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAGGAGAGCACTTGCTTGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAGgtgcgggacactagctcagagcgacatgcattgggcccaggctggggttgtatccgtgtctgaacccaggacgttaagagagtatggcctgctgcaggtg...
species | Chlamydomonas reinhardtii |
transcript | EDP04523 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAG CGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAGEST: gi|23360133|gb|BU647953.1|BU647953
genomic: TGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAGgtgcgggaca ... tgctacgcagCGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAG
EST: CGCTTTGTGGAGACGACCCAGTACATCCTGCAG CGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAGEST: gi|22070474|gb|BQ819807.1|BQ819807
genomic: CGCTTTGTGGAGACGACCCAGTACATCCTGCAGgtgcgggaca ... tgctacgcagCGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAG
EST: CCAGTACATCCTGCAG CGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAGEST: gi|22070475|gb|BQ819808.1|BQ819808
genomic: CCAGTACATCCTGCAGgtgcgggaca ... tgctacgcagCGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAG
EST: TGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAG CGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAGEST: gi|6549700|gb|AV395484.1|AV395484
genomic: TGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAGgtgcgggaca ... tgctacgcagCGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAG
EST: TGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAG CGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAG
genomic: TGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAGgtgcgggaca ... tgctacgcagCGTGCGGCGCACAAGGCGGACAACAGCTCTGGCGGCTTCTAACGGCAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAGGAGAGCACTTGCTTGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCCAGTACATCCTGCAGgtgcgggacactagctcagagcgacatgcattgggcccaggctggggttgtatccgtgtctgaacccaggacgttaagagagtatggcctgctgcaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaggt