Sequence
atgc intronic sequence ATGC exonic sequence...gtcaaccccccaagggcaactgcacaagacacccctgaaacccagcggtatttcgttcctgcaccgccttggccctaatctaccctttggtggcctacagGTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAGGAGAGCACTTGCTTGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCC
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP04523 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22070475|gb|BQ819808.1|BQ819808EST: GCGAGTCTCAAGTGGCACAGATTCAGAGTATGATTTCGACACTAACGGAG GTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAG
genomic: GCGAGTCTCAAGTGGCACAGATTCAGAGTATGATTTCGACACTAACGGAGgtaagcttgg ... tggcctacagGTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAG
EST:
gi|6549700|gb|AV395484.1|AV395484EST: TCGACACTAACGGAG GTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAG
genomic: TCGACACTAACGGAGgtaagcttgg ... tggcctacagGTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cggtatttcgttcctgcaccgccttggccctaatctaccctttggtggcctacagGTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAGGAGAGCACTTGCTTGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCC
ccctaat putative branch site (score: 3)
taatcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaaccccccaagggcaactgcacaagacacccctgaaacccagcggtatttcgttcctgcaccgccttggccctaatctaccctttggtggcctacagGTGTGCTGGGACACCTGTGTCCAGTCTCCAGGAAGCTATCTGTCCAGCAAGGAGAGCACTTGCTTGGAAAACTGCGCGCGCCGCTTTGTGGAGACGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- caacccc
- - - - - - - - - - - - caagaca
- - - - - - - - - - - - - - - - - - -aaaccca