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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctctcgtacacgtgccctccgaaccacaacggacatagcctccttatccaacccacacccatgcgcccgccttgtctgcacgtgcacacgcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGACTCGCTGCGCGGCGACCTGGGCCTGCCCGCATTCCCGCCCAAGGACCTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04477
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161817645|gb|FC099960.1|FC099960
EST:     TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAAGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|161796751|gb|FC083185.1|FC083185
EST:     TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAAGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|23365483|gb|BU653303.1|BU653303
EST:     CACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: CACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|23363018|gb|BU650838.1|BU650838
EST:     TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         AATGCCG-CCGGTTCTGACA-GGTAATGATCCTGTGGA
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagA-TGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGA
EST: gi|14233514|gb|BG852330.1|BG852330
EST:     TCAACGCCACCTGCGTGGAGCTGCTCA-CGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAGGGGTA-TGATCCTGTGGAACCTGNAGCTGGA
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGG-TAATGATCCTGTGGAACCTGGAGCTGGA
EST: gi|14233512|gb|BG852328.1|BG852328
EST:     TCAACGCCACCTGCG-GGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|16429986|gb|BI995212.1|BI995212
EST:     TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|23360374|gb|BU648194.1|BU648194
EST:     TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|15693416|gb|BI717721.1|BI717721
EST:     TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: TCAACGCCACCTGCGTGGAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
EST: gi|14233511|gb|BG852327.1|BG852327
EST:     GAGCTGCTCAACGTGCGCACGTACATCGAAAAG                         ATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC
genomic: GAGCTGCTCAACGTGCGCACGTACATCGAAAAGgtgggcgcgg ... gcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctctcgtacacgtgccctccgaaccacaacggacatagcctccttatccaacccacacccatgcgcccgccttgtctgcacgtgcacacgcactcgcagATGCCGGCCGGTTCTGACAAGGTAATGATCCTGTGGAACCTGGAGCTGGACTCGCTGCGCGGCGACCTGGGCCTGCCCGCATTCCCGCCCAAGGACCTGC

- - tcgtaca
- - - - - - - - - - - aaccaca
- - - - - - - - - - - - - - - -ggacata
- - - - - - - - - - - - - - - - - - - - - - - - - -acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtgca