1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgctgaagggggcaggcacaggccgcacgtttagaatgcaacaccgggtctctggctgggcttgccttgaaccacatgcggttgagcagctcccgttgtctgttgtcctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGCACGCGCGCACGTGCAGGAT
species | Chlamydomonas reinhardtii |
transcript | EDP04477 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|161817645|gb|FC099960.1|FC099960
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|10774493|gb|AV625316.1|AV625316
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|161796751|gb|FC083185.1|FC083185
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|23361841|gb|BU649661.1|BU649661
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|16073534|gb|BI875530.1|BI875530
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGCCCACATCGCTCTGCCTGATGGAGGCAAGEST: gi|23365484|gb|BU653304.1|BU653304
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|23363018|gb|BU650838.1|BU650838
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|15370284|gb|BI529710.1|BI529710
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|14233514|gb|BG852330.1|BG852330
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|49464076|gb|BP091989.1|BP091989
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAATGC CTGTCGGTGCGCGTGC-GGAAGGTCCACATCGTTEST: gi|34984572|gb|CF558489.1|CF558489
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCG-GCCGGAAGGTCCACATCGTT
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|10779981|gb|AV636661.1|AV636661
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTEST: gi|6543760|gb|AV389544.1|AV389544
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCT
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|23360374|gb|BU648194.1|BU648194
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|23360664|gb|BU648484.1|BU648484
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC CTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGEST: gi|23365035|gb|BU652855.1|BU652855
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
EST: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGTCAAACGC CTGTCGGCGCGCGGTCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
genomic: ACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGCgtgagtgctg ... ctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAG
tgccttgaaccacatgcggttgagcagctcccgttgtctgttgtcctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGCACGCGCGCACGTGCAGGAT
tcctgctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgctgaagggggcaggcacaggccgcacgtttagaatgcaacaccgggtctctggctgggcttgccttgaaccacatgcggttgagcagctcccgttgtctgttgtcctgctcgcagCTGTCGGCGCGCGGCCGGAAGGTCCACATCGTTCTGCCTGATGGAGGCGAGCACGCGCGCACGTGCAGGAT
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