1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgccgcagcggggaagatgcgctgattccaccggggccgcccttccatacccaccactgcccaccgcctcgcatgacccactgccacttccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC
species | Chlamydomonas reinhardtii |
transcript | EDP04477 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|161817645|gb|FC099960.1|FC099960
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|10773140|gb|AV623963.1|AV623963
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCEST: gi|10774493|gb|AV625316.1|AV625316
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|161796751|gb|FC083185.1|FC083185
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|23361841|gb|BU649661.1|BU649661
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|16073534|gb|BI875530.1|BI875530
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|23365484|gb|BU653304.1|BU653304
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|23363018|gb|BU650838.1|BU650838
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|15370284|gb|BI529710.1|BI529710
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|14233514|gb|BG852330.1|BG852330
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|49464076|gb|BP091989.1|BP091989
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: ACTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|34984572|gb|CF558489.1|CF558489
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|10779981|gb|AV636661.1|AV636661
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|6543760|gb|AV389544.1|AV389544
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|23360374|gb|BU648194.1|BU648194
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|49459008|gb|BP086921.1|BP086921
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGAEST: gi|23360664|gb|BU648484.1|BU648484
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGA
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCEST: gi|23365035|gb|BU652855.1|BU652855
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
EST: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACG CCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
genomic: CCTCAAACTGCTGGAGGTGGAGTTCCCCGCGTTGCCCACCAATATCGACGgtgcgtgagc ... ccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCC
ccatacccaccactgcccaccgcctcgcatgacccactgccacttccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC
cttccaccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccgcagcggggaagatgcgctgattccaccggggccgcccttccatacccaccactgcccaccgcctcgcatgacccactgccacttccacccgcagCCTACAAGGGCGCCTCTGACCTGTTCATTGACTCCAACACCCAGCTGGCCCTAGCCGCTGCCAAACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - -acccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccact