1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctaaacccgtgttccccgcctccttcccctccgctggtttggcttgtttggtttggtttgggctggtattcacaacccccctcttatccgtcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTCATGCTGCAGCAGTTCCAGAACCCCAACAACCCCAAGGTGCACTACGAGA
species | Chlamydomonas reinhardtii |
transcript | EDP04426 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGCTAG GGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTEST: gi|10772916|gb|AV623739.1|AV623739
genomic: TGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATG-AAGgtgcggcgga ... tcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTT
EST: GTGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAG GGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTCEST: gi|22056000|gb|BQ812146.1|BQ812146
genomic: GTGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAGgtgcggcgga ... tcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTC
EST: GTGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAG GGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTCEST: gi|14235562|gb|BG854378.1|BG854378
genomic: GTGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAGgtgcggcgga ... tcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTC
EST: TGCCTTCGGCGCCGNAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAG GGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTCEST: gi|14235563|gb|BG854379.1|BG854379
genomic: TGCCTTCGGCGCCG-AGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAGgtgcggcgga ... tcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTC
EST: GTGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAG GGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTC
genomic: GTGCCTTCGGCGCCGAGCTGGTGCTGACTGACCCCGCCAAGGGCATGAAGgtgcggcgga ... tcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTC
gtttggtttggtttgggctggtattcacaacccccctcttatccgtcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTCATGCTGCAGCAGTTCCAGAACCCCAACAACCCCAAGGTGCACTACGAGA
cccccctcttatccgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaacccgtgttccccgcctccttcccctccgctggtttggcttgtttggtttggtttgggctggtattcacaacccccctcttatccgtcatgcatagGGCGCCGTGGCCAAGGCCGAGGAGATCCTGGCCTCCACGCCGGACGCCTTCATGCTGCAGCAGTTCCAGAACCCCAACAACCCCAAGGTGCACTACGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- aaacccg
- - - - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - cttgttt
- - - - - - - - - - - - - - - - - - - - - - - -ttggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaca