1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...accccagcacggagcgctcggtagcctggactgccccaaccctcctcaccgccccacgcccacccccaccccttcctattctgctgacttgatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTCATCGCCGCCGCCCGCGGCTACAAGCTCATCCTGACCATGCCCGCCTCCA
species | Chlamydomonas reinhardtii |
transcript | EDP04426 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGCCTCATCACCCCGGGCAAG ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTCEST: gi|22056000|gb|BQ812146.1|BQ812146
genomic: AGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTCEST: gi|10774126|gb|AV624949.1|AV624949
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accccagcacggagcgctcggtagcctggactgccccaaccctcctcaccgccccacgcccacccccaccccttcctattctgctgacttgatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTCATCGCCGCCGCCCGCGGCTACAAGCTCATCCTGACCATGCCCGCCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -ccagcac
- - - - - - - - - - - - - - - - - cccaacc