1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagcaatagggaaccgaatctggtgcggctagcatacacaatgacacaaaccaggatgcatttaccccaggctcaaactgcaacctgaataacgcttgcgttcttgtggttgtggtcatgtgcgtctgcagGATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTGGCTGCCCCTCGCTGAGCGCTGGAGTCCCGGGCTTGAAACCCAACGGTCA
species | Chlamydomonas reinhardtii |
transcript | EDP04422 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCGCGTGTGAGCCGCATGGTCTTCATCGGCCGTGGGCTGGACAAAGAG GATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTGEST: gi|22063805|gb|BQ815430.1|BQ815430
genomic: AGTCGCGTGTGAGCCGCATGGTCTTCATCGGCCGTGGGCTGGACAAAGAGgtgagcaata ... gcgtctgcagGATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTG
EST: AGTCGCGTGTGAGCCGCATGGTCTTCATCGGCCGTGGGCTGGACAAAGAG GATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTGEST: gi|34994689|gb|CF568606.1|CF568606
genomic: AGTCGCGTGTGAGCCGCATGGTCTTCATCGGCCGTGGGCTGGACAAAGAGgtgagcaata ... gcgtctgcagGATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTG
EST: AGTCGCGTGTGAGCCGCATGGTCTTCATCGGCCGTGGGCTGGACAAAGAG GATCTCGCGGCAGGCTTTCGCACCTGCATCGC
genomic: AGTCGCGTGTGAGCCGCATGGTCTTCATCGGCCGTGGGCTGGACAAAGAGgtgagcaata ... gcgtctgcagGATCTCGCGGCAGGCTTTCGCACCTGCATCGC
actgcaacctgaataacgcttgcgttcttgtggttgtggtcatgtgcgtctgcagGATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTGGCTGCCCCTCGCTGAGCGCTGGAGTCCCGGGCTTGAAACCCAACGGTCA
gaataac putative branch site (score: 2)
tgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaatagggaaccgaatctggtgcggctagcatacacaatgacacaaaccaggatgcatttaccccaggctcaaactgcaacctgaataacgcttgcgttcttgtggttgtggtcatgtgcgtctgcagGATCTCGCGGCAGGCTTTCGCACCTGCATCGCAGCGCCGGTGCCGCAGGTGGCTGCCCCTCGCTGAGCGCTGGAGTCCCGGGCTTGAAACCCAACGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA