1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAGTCCCTGGTGGAGTGTGAGTCGCCACGCCGTTGCGCTAAGCGTGCCGCGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAGgtgagcctttgccagctttcctgctgatactgctagacacgggacatgtcagtgatgcaggggcccggcagggacctgttccccttgcacagtttgcttctgttgctcatatgtcagctcctcctcgcttatgcacgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04422 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAG GAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTGEST: gi|23364622|gb|BU652442.1|BU652442
genomic: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAGgtgagccttt ... gcacgcgcagGAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTG
EST: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAG GAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTGEST: gi|34994689|gb|CF568606.1|CF568606
genomic: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAGgtgagccttt ... gcacgcgcagGAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTG
EST: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAG GAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTGEST: gi|34991214|gb|CF565131.1|CF565131
genomic: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAGgtgagccttt ... gcacgcgcagGAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTG
EST: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAG GAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTG
genomic: CGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAGgtgagccttt ... gcacgcgcagGAGCGGCGGGACGTGCCTATGGAGCCGGCGGCGGTAAACTCGGGCGGCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTCCCTGGTGGAGTGTGAGTCGCCACGCCGTTGCGCTAAGCGTGCCGCGGACTGCTTCGGTCCGCAGCAAGAAAGCAAGCGGCGATCATCACTTGAGgtgagcctttgccagctttcctgctgatactgctagacacgggacatgtcagtgatgcaggggcccggcagggacctgttccccttgcacagtttgcttctgttgctcatatgtcagctcctcctcgcttatgcacgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG