1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agggcctggacccgcggtcgcgtacacctggggcagcaaaccttgcttcatatgtaatactgatgtagtttatatttgcctgcgcggcggttgctttcagATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCGGCGGAGACCGCGGCTGTGACGGCCGCGGATGATGCAGCAGCAGAAGCCC
species | Chlamydomonas reinhardtii |
transcript | EDP04422 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTATTCAGGAACGAGCGGCAGCGCTCATAGGATAAAGGAGTCAGAG ATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCGEST: gi|23364622|gb|BU652442.1|BU652442
genomic: GCAGCTATTCAGGAACGAGCGGCAGCGCTCATAGGATAAAGGAGTCAGAGgtaagcggcc ... ttgctttcagATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCG
EST: GCAGCTATTCAGGAACGAGCGGCAGCGCTCATAGGATAAAGGAGTCAGAG ATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCGEST: gi|10127930|gb|BE726746.1|BE726746
genomic: GCAGCTATTCAGGAACGAGCGGCAGCGCTCATAGGATAAAGGAGTCAGAGgtaagcggcc ... ttgctttcagATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCG
EST: GCAGCTATTCAGGAACGAGCGGCAGCGCTCATAGGATAAAGGAGTCAGAG ATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCG
genomic: GCAGCTATTCAGGAACGAGCGGCAGCGCTCATAGGATAAAGGAGTCAGAGgtaagcggcc ... ttgctttcagATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCG
cttcatatgtaatactgatgtagtttatatttgcctgcgcggcggttgctttcagATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCGGCGGAGACCGCGGCTGTGACGGCCGCGGATGATGCAGCAGCAGAAGCCC
tactgat putative branch site (score: 2)
ttgctttc putative PPT
atgtagtttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggcctggacccgcggtcgcgtacacctggggcagcaaaccttgcttcatatgtaatactgatgtagtttatatttgcctgcgcggcggttgctttcagATGCGGTCACCACGAAGCCCGAGGATGCGGGTTTTGGAAATCCTTGGCGCGGCGGAGACCGCGGCTGTGACGGCCGCGGATGATGCAGCAGCAGAAGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - -acacctg
- - - - - - - - - - - - - - - - gcagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttatat